MIG-10 Functions with ABI-1 to Mediate the UNC-6 and SLT-1 Axon Guidance Signaling Pathways

Summary

Extracellular guidance cues steer axons towards their targets by eliciting morphological changes in the growth cone. A key part of this process is the asymmetric recruitment of the cytoplasmic scaffolding protein MIG-10 (lamellipodin). MIG-10 is thought to asymmetrically promote outgrowth by inducing actin polymerization. However, the mechanism that links MIG-10 to actin polymerization is not known. We have identified the actin regulatory protein ABI-1 as a partner for MIG-10 that can mediate its outgrowth-promoting activity. The SH3 domain of ABI-1 binds to MIG-10, and loss of function of either of these proteins causes similar axon guidance defects. Like MIG-10, ABI-1 functions in both the attractive UNC-6 (netrin) pathway and the repulsive SLT-1 (slit) pathway. Dosage sensitive genetic interactions indicate that MIG-10 functions with ABI-1 and WVE-1 to mediate axon guidance. Epistasis analysis reveals that ABI-1 and WVE-1 function downstream of MIG-10 to mediate its outgrowth-promoting activity. Moreover, experiments with cultured mammalian cells suggest that the interaction between MIG-10 and ABI-1 mediates a conserved mechanism that promotes formation of lamellipodia. Together, these observations suggest that MIG-10 interacts with ABI-1 and WVE-1 to mediate the UNC-6 and SLT-1 guidance pathways.

Introduction

Axons navigate to their targets in the developing nervous system by making a series of responses to extracellular guidance cues [1]–[6]. Several conserved families of guidance cues have been identified, including the netrins and slits. These guidance cues activate receptors on the growth cone at the tip of the growing axon, causing a directional response that steers the axon either towards or away from the source of guidance cue. A key component of the mechanism that drives the directional response to guidance cues is the asymmetric accumulation of f-actin within the growth cone. For instance, in vitro growth cone turning assays have shown that actin is asymmetrically polymerized to the side of the growth cone closest to a source of netrin, which is thought to cause the growth cone to turn towards the source of netrin [7]. Likewise, asymmetric actin distribution has also been observed in growth cones migrating in vivo [8], [9].

Although many actin regulatory proteins have been implicated in the control of growth cone morphology, we do not understand how these proteins are coordinated to cause a directional response to guidance cues [10]. For example, the WVE-1 (Wave) complex activates the ARP2/3 actin-nucleating complex to control the formation of growth cone filopodia [11], [12]. Furthermore, loss of function of WVE-1 or ARP2/3 components causes defects in axon guidance [11], [13], [14]. However, we do not know how the activity of this complex is controlled to give rise to the asymmetry that underlies growth cone guidance. In particular, it is difficult to understand how shallow gradients of guidance cues could be transformed into the sharply polarized outgrowth-promoting activity that is required for a directional response.

MIG-10 may provide a key to understanding how guidance signals are transformed into sharply localized actin-based outgrowth activity. MIG-10 is a cytoplasmic outgrowth-promoting protein that becomes sharply localized in response to the UNC-6 guidance cue [15]–[19]. The role of MIG-10 in guidance has been studied in the HSN neuron of C. elegans, which extends an axon ventrally, towards a source of UNC-6 guidance cue. In response to UNC-6, the UNC-40 (DCC) receptor becomes asymmetrically localized to the side of the cell closest to the source of UNC-6. This in turn, leads to the asymmetric localization of MIG-10 to the side of the cell closest to the source of UNC-6. MIG-10 has an outgrowth-promoting activity, thereby causing axon growth towards the source of UNC-6. However, the mechanisms that mediate the outgrowth-promoting activity of MIG-10 are not understood.

Although MIG-10 and its homolog lamellipodin are thought to play a major role in inducing actin polymerization, the mechanisms that mediate this effect are not known [20]. Knockdown of lamellipodin in fibroblasts results in a severe reduction in polymerized f-actin, with large areas devoid of the normal meshwork of f-actin. The Ena/VASP actin regulatory proteins can physically interact with lamellipodin. However, loss of all Ena/VASP function in fibroblasts does not produce the severe defects in actin polymerization that occur with knockdown of lamellipodin. Likewise, in C. elegans axon guidance, complete loss of Ena/VASP (UNC-34) function results in axon guidance defects that are far weaker than those observed after complete loss of MIG-10 function [18]. Furthermore, complete loss of UNC-34 function does not reduce the outgrowth-promoting activity of MIG-10 [16]. Together, these observations indicate that the actin-polymerizing activity of lamellipodin and MIG-10 must be explained primarily through interaction with an effector other than UNC-34 (Ena/VASP).

Here, we present evidence that the outgrowth-promoting activity of MIG-10 is mediated through interactions with ABI-1 and WVE-1. Furthermore, our genetic data indicate that MIG-10 functions with both ABI-1 and WVE-1 to mediate the UNC-6 and SLT-1 guidance signaling pathways. ABI-1 and WVE-1 are part of a well-characterized complex that promotes actin polymerization by activating the actin-nucleating activity of the ARP2/3 complex [21]–[26]. Thus, our observations suggest a model where MIG-10 interacts with ABI-1 and WVE-1 to direct actin polymerization in response to guidance cues.

Results

Identification of ABI-1 as a potential component of the MIG-10 scaffold

MIG-10 is hypothesized to serve as a scaffold that can asymmetrically localize outgrowth-promoting proteins. However, the identities of these outgrowth-promoting proteins are unknown. We hypothesized that these outgrowth-promoting proteins are likely to bind to the polyproline motifs in MIG-10. Therefore, we searched for proteins that include polyproline-binding domains (SH3, WW, and EVH1 domains) for potential function in the MIG-10 pathway. To do this, we constructed an RNAi sublibrary for genes that encode polyproline-binding domains and screened for RNAi clones that phenocopy loss of mig-10 function in the HSN neuron (Figure 1). The HSN axon normally migrates ventrally to the ventral nerve cord (Figure 1B). In mig-10 null mutants, 44±4.4% of the HSN axons migrate anteriorly before turning ventrally [18]. We observed this same phenotype in mig-10(RNAi) animals, but with a penetrance of 21.6±4.6% (see Figure 1C). From our screen, we identified abi-1(RNAi), which had a penetrance of 15.1±3.6% HSN guidance defects (see Figure 1D). The migration of the HSN cell body was also affected by mig-10(RNAi) and abi-1(RNAi). However, previous analysis has indicated that HSN axon guidance defects are not secondary consequences of defects in cell body migration [18], [27].

Since ABI-1 has an SH3 domain, and MIG-10 has consensus-binding sites for SH3 domains, we tested for a physical interaction between the SH3 domain of ABI-1 and MIG-10 (Figure 1E). We found that MIG-10 binds to the SH3 domain of ABI-1 fused to GST (GST::ABI-1-SH3). By contrast, MIG-10 did not bind to GST alone. Two concurrent studies have also found that MIG-10 can bind to full length ABI-1, using yeast 2 hybrid and also co-immunoprecipitation [28], [29]. Together, these observations identify ABI-1 as a potential member of the MIG-10 outgrowth-promoting complex.

ABI-1 functions in UNC-6 and SLT-1 signaling

The AVM and PVM neurons are ideal for studying ventral guidance because their axons are guided ventrally by both attraction towards a source of UNC-6 guidance cue and by repulsion from a source of the SLT-1 guidance cue. Previous work with these neurons has indicated that MIG-10 functions in both the UNC-6 and SLT-1 signaling pathways [16], [17]. In these experiments, null alleles were used to remove function of either the UNC-6 or SLT-1 guidance cues. Since unc-6; slt-1 double null mutants exhibit guidance defects that are nearly fully penetrant, UNC-6 and SLT-1 are thought to be the predominant guidance cues responsible for AVM and PVM axon guidance [16], [17], [30], [31]. Therefore, the function of either guidance cue can be assayed by removing the function of the other cue. For example, a null mutation in mig-10 can enhance guidance defects in the unc-6 null mutant background, indicating that mig-10 functions in SLT-1 signaling. Likewise, a null mutation in mig-10 can also enhance defects in the slt-1 null mutant background, indicating that mig-10 functions in UNC-6 signaling. To determine if ABI-1 also functions in UNC-6 and SLT-1 signaling, we repeated these experiments with an abi-1 loss of function mutation.

To determine if ABI-1 functions in the UNC-6 signaling pathway, we examined abi-1(tm494); slt-1(eh15) double mutants. The abi-1(tm494) mutation is a hypomorphic loss of function allele [32], whereas the slt-1(eh15) is a null allele. In this slt-1 null mutant background, the AVM and PVM axons are guided by attraction towards UNC-6. Thus, any enhancement of guidance defects in the abi-1; slt-1 double mutant would indicate that ABI-1 functions in the UNC-6 pathway. Indeed, we found that in abi-1; slt-1 double mutants, both AVM and PVM ventral guidance errors were enhanced relative to slt-1 single mutants, indicating that ABI-1 is involved in the UNC-6 attractive signaling pathway (Figure 2A–2D).

To determine if ABI-1 functions in the SLT-1 signaling pathway, we examined abi-1(tm494); unc-6(ev400) double mutants. In this unc-6 null mutant background, these axons are guided by repulsion from SLT-1. Both AVM and PVM axon guidance errors were significantly enhanced by loss of abi-1 function in abi-1; unc-6 double mutants, indicating that ABI-1 is involved in the SLT-1 repulsive signaling pathway (Figure 2A–2D). Despite being involved in both UNC-6 and SLT-1 signaling, we did not observe any AVM or PVM guidance defects in abi-1 single mutants, suggesting that ABI-1, like MIG-10, functions redundantly with other proteins to mediate UNC-6 and SLT-1 signaling.

Although double mutant analysis suggests that the AVM and PVM axons are guided predominately by UNC-6 and SLT-1, we can not exclude the possibility of a third guidance pathway. To determine if ABI-1 might function in a third pathway, we constructed an unc-6; slt-1; abi-1 triple mutant. Neither AVM nor PVM axon guidance defects were enhanced in the unc-6; slt-1; abi-1 triple mutant relative to the unc-6; slt-1 double mutant (Figure 2E and Figure S1). These observations do not support a role for ABI-1 in a third guidance pathway.

To determine if ABI-1 functions cell autonomously to mediate the axon guidance, we conducted a transgenic rescue experiment in abi-1; slt-1 double mutants (Figure 2F). The mec-4 promoter was used to drive expression of ABI-1 in the six touch neurons, including the PVM neuron. Transgenic expression of ABI-1 in the PVM neuron partially rescued the ventral guidance defects in the abi-1; slt-1 double mutants. By contrast, siblings that had lost the transgenic array did not show rescue of the ventral guidance defects. These observations indicate that ABI-1 functions cell autonomously to mediate the UNC-6 signaling pathway.

Since we found that ABI-1 functions in the UNC-6 signaling pathway, we also wanted to determine if ABI-1 functions downstream of UNC-40, the receptor for UNC-6. To determine if ABI-1 functions downstream of UNC-40, we used a mec-7::unc-40 transgene to create an UNC-40 gain of function phenotype. The mec-7::unc-40 transgene caused ventral axon guidance defects in the AVM and PVM neurons (Figure 2G and Figure S2). These guidance defects are suppressed by loss of abi-1 function in both the AVM and PVM neurons. These observations suggest that ABI-1 functions downstream of UNC-40.

MIG-10 functions with ABI-1 and WVE-1 to mediate ventral guidance of the HSN axon

The physical association between MIG-10 and ABI-1 suggests that they could function together to regulate axon guidance. To study genetic interactions between mig-10 and abi-1, we used the HSN ventral axon migration, since single mutants in abi-1 or mig-10 produce guidance defects in this neuron. Homozygous mig-10(ct41) null mutants have guidance defects with a penetrance of 44±4.4% [18]. Homozygous abi-1(tm494) hypomorphic loss of function mutants have HSN guidance defects with a penetrance of 14±3.4% (n = 100). To ask if ABI-1 and MIG-10 function together, we used dosage sensitive genetic analysis (Figure 3A). Both the abi-1 and mig-10 mutations were recessive, as neither mig-10 heterozygotes (mig-10/+) nor abi-1 heterozygotes (abi-1/+) had guidance errors in excess of wild-type animals. To test for a genetic interaction between mig-10 and abi-1, we examined HSN axon guidance in animals transheterozygous for mutations in mig-10 and abi-1, that is containing one mutant and one wild-type copy of each of these genes (mig-10/+; abi-1/+). These transheterozygous mutants had HSN guidance defects with a penetrance of 10.7±1.8% (Figure 3A). Consistent with the physical association between MIG-10 and ABI-1, these observations indicate that ABI-1 functions with MIG-10 to regulate axon guidance.

Since mig-10 interacts genetically with abi-1, we also wanted to test for interaction between mig-10 and wve-1. Studies of the mammalian homologs of ABI-1 and WVE-1, known as Abi1 and Wave, have indicated that Abi1 binds to Wave to enhance its ability to promote lamellipodial protrusion by activating the ARP2/3 complex to promote nucleation and branching of f-actin [21], [22], [24], [25]. Likewise, genetic studies in C. elegans have indicated that ABI-1 and WVE-1 are required for subcellular enrichment of f-actin and for the formation of cellular protrusions during cell migration [23]. To determine if WVE-1 is involved in HSN ventral guidance, we examined homozygous wve-1(ok3308) mutants that had been maternally rescued. We found that these wve-1 mutants had HSN guidance defects with a penetrance of 13±3.3% (n = 150), suggesting that WVE-1 is involved in HSN ventral guidance. To determine if MIG-10 functions with WVE-1, we tested for dosage-sensitive genetic interaction between mig-10 and wve-1 (Figure 3B). Both wve-1(ok3308) and mig-10(ct41) are recessive, as neither mig-10 heterozygotes (mig-10/+) nor wve-1 heterozygotes (wve-1/+) had guidance errors in excess of wild-type animals. Animals transheterozygous for mig-10(ct41) and wve-1(ok3308), (mig-10)/+; wve-1/+), had HSN guidance errors with a penetrance of 20.7±3.3% (Figure 3B). We repeated this experiment with the wve-1(ne350) allele [23] and found that animals transheterozygous for mig-10(ct41) and wve-1(ne350) had HSN guidance errors with a penetrance of 18±2.7% (n = 200). Together, these results indicate that MIG-10 functions with ABI-1 to regulate guidance.

ABI-1 and WVE-1 mediate the outgrowth-promoting activity downstream of MIG-10

Previous work has indicated that MIG-10 has an outgrowth-promoting activity and that the actin regulatory protein UNC-34 can interact with MIG-10 [16], [17]. However, complete loss of UNC-34 function does not reduce the outgrowth-promoting activity of MIG-10, indicating that UNC-34 does not account for MIG-10's outgrowth promoting activity.

Since ABI-1 and WVE-1 are part of a complex that can promote lamellipodial protrusion, we asked if ABI-1 and WVE-1 can mediate the outgrowth-promoting activity of MIG-10. To test this hypothesis, we determined if loss of WVE-1 function or loss of ABI-1 function could suppress the outgrowth-promoting activity of MIG-10. The ALM neuron normally has a single axon that grows towards the anterior (Figure 4A). Transgenic expression of MIG-10 in the ALM neuron causes the growth of a second posterior process (Figure 4B). The growth of this second process is suppressed by loss of function mutations in abi-1 or wve-1 (Figure 4C). By contrast, max-2(nv162), a likely null mutation, had no effect on the growth of the second process. The lack of an effect of the max-2 mutation is expected because MAX-2 is thought to regulate axon guidance by functioning in a pathway that is parallel to MIG-10 [18]. Together, these observations indicate that ABI-1 and WVE-1 function downstream of MIG-10 to mediate its outgrowth-promoting activity.

We also examined a role for ABI-1 in mediating the MIG-10 outgrowth-promoting activity in the AVM and PVM neurons. In these neurons, the outgrowth-promoting activity of MIG-10 can be oriented by either the UNC-6 or SLT-1 guidance cues [17]. Thus, transgenic expression of MIG-10 does not cause multipolar outgrowth in the wild-type, unc-6 null, or slt-1 null backgrounds. However, transgenic expression of MIG-10 does produce multipolar outgrowth in the unc-6; slt-1 double null background. We found that the abi-1(tm494) loss of function mutation significantly suppresses the MIG-10 outgrowth activity in the unc-6; slt-1 double null mutant background in the AVM and PVM neurons (Figure 4D and Figure S3). These results further support our conclusion that ABI-1 mediates the outgrowth-promoting activity of MIG-10.

ABI-1 (Abi1) mediates a conserved pathway that promotes formation of lamellipodia downstream of MIG-10

Overexpression of C. elegans MIG-10 in cultured mammalian cells induces the formation of lamellipodia, suggesting that MIG-10 can interact with a conserved pathway to promote the formation of lamellipodia [17]. To determine if ABI-1 might be a part of that conserved pathway, we asked if the mammalian homolog of ABI-1 (Abi1) is required for the lamellipodia-forming activity of MIG-10 in cultured mammalian cells. To address this question, we knocked down expression of mammalian ABI-1 (Abi1) in HEK293 cells expressing MIG-10::GFP (Figure 5). Control cells expressing GFP have a round morphology with only minimal lamellipodia (Figure 5A, 5D). Expression of MIG-10::GFP induces the formation of lamellipodia (Figure 5B, 5D), which is significantly reduced by co-expression of an Abi1 shRNA (Figure 5C, 5D). By contrast, co-expression of a scrambled control shRNA had no effect on lamellipodia formation (Figure 5D). These results indicate that MIG-10 promotes the formation of lamellipodia in mammalian cells by functioning with a conserved pathway that includes mammalian Abi1.

Discussion

Several actin regulatory proteins have been implicated in the control of growth cone morphology [10]. A few of these have been implicated in the directional response to specific guidance cues. However, little is known about how actin regulatory proteins interact with one another to establish a directional response to guidance cues. Here, we uncover an interaction between the MIG-10 cytoplasmic scaffold and the ABI-1 actin regulatory protein. This interaction could help to explain how actin polymerization is spatially regulated during guidance, since MIG-10 is asymmetrically localized in response to guidance cues [15], [18]. Concurrent work has indicated that the interaction between MIG-10 and ABI-1 can also regulate excretory canal morphogenesis and synapse formation [28], [29], Moreover, recent work has also shown that axon guidance cues and receptors are involved in regulating the WVE-1 complex during embryonic morphogenesis [33]. Together, these observations suggest that the interactions between axon guidance signaling components and the WVE-1 actin regulatory complex may be important in multiple aspects of actin-dependant developmental processes.

Genetic studies of UNC-6 (netrin) signaling in C. elegans have revealed a direction-sensing module that includes the UNC-40 receptor, PI 3-Kinase, Rac and MIG-10 [15]–[19]. UNC-6 is secreted from ventrally localized cells and is thought to form a gradient that causes the HSN axon to migrate ventrally. In response to the UNC-6 gradient, UNC-40 becomes asymmetrically localized to the ventral side of the HSN cell. UNC-40 is thought to initiate signaling events that involve activation of Rac and production of PI(3,4)P2 by PI 3-Kinase. MIG-10 binds to both Rac and PI(3,4)P2 and thus becomes asymmetrically localized to the ventral side of the cell. This direction-sensing module is reminiscent of chemotaxis in neutrophils, where Rac and PI 3-Kinase are thought to form a positive feedback loop that transforms directional information from shallow gradients of chemotactic cues into sharply localized directional signal that promotes actin-based motility [34], [35]. Likewise, we propose that UNC-40, Rac, PI 3-Kinase and MIG-10 form a direction-sensing module that can transform a shallow gradient of UNC-6 into a sharply localized outgrowth-promoting activity.

Our current results provide a link that connects MIG-10 to an actin polymerization-promoting complex, thereby explaining how the directional information encoded by asymmetric localization of MIG-10 can be transformed into directed axon outgrowth. We have found that MIG-10 interacts with ABI-1 and WVE-1 to mediate axon guidance. Previous work has indicated that ABI-1 binds to WVE-1 to promote its ability to activate the ARP2/3 complex [21]. The ARP2/3 complex can nucleate actin branches, thereby producing the meshwork of actin that is thought to provide the force that drives motility [36]. Therefore, the interaction between MIG-10 and ABI-1 can explain how MIG-10 is able to spatially direct outgrowth activity. We have been unable to visualize ABI-1::GFP in the HSN neuron. However, studies of Abi1 in mammalian cells indicate that it is located at the leading edge of migrating cells [37]. Since we have found that ABI-1 functions with MIG-10, it is likely that ABI-1 localizes to the leading edge of the HSN neuron. Alternatively, ABI-1 might be localized throughout the cell. However, since MIG-10 is localized to the leading edge, the functional interaction between MIG-10 and ABI-1 would still be confined to the leading edge.

Previous work has implicated ABI-1 and WVE-1 in axon guidance, but the guidance cues were not known [11], [13], [14]. Our current work indicates that ABI-1 and WVE-1 are involved in both the attractive UNC-6 signaling pathway and the repulsive SLT-1 signaling pathway. Despite being involved in both UNC-6 and SLT-1 signaling, the single abi-1 loss of function mutant does not have any defects in AVM or PVM guidance, suggesting that ABI-1 functions redundantly with other proteins to mediate guidance in these neurons. The lack of AVM and PVM guidance defects in abi-1(tm494) mutants might also be due to the fact that this is a hypomorphic allele [32]. In fact, recent work has indicated that RNAi depletion of GEX-3, another member of the WVE-1 complex, can cause mild guidance defects in the AVM [33]. In our study, the role of ABI-1 in axon guidance is revealed in abi-1; unc-6 or abi-1; slt-1 double mutants, in which guidance information has been reduced to create a sensitized genetic background. Mutations in several other axon guidance genes (including null alleles) also give only weak or non-existent phenotypes as single mutants, but are enhanced by unc-6 or slt-1 null mutations. These mutations include mig-10(null), age-1(maternally rescued), unc-34(null), ced-10(hypomorphic), unc-115(null) and madd-2(null) 16–18,30,31. Together, these observations suggest that guidance signaling functions with a great deal of redundancy in these neurons.

Our results, when considered with previous findings, suggest that CED-10, MIG-10, ABI-1 and WVE-1 may be organized into a complex or complexes that features redundant physical interactions (see Figure S4). Our previous and current results suggest that CED-10 can interact with MIG-10 and that MIG-10 interacts with ABI-1 [18]. Previous studies have indicated that CED-10 can interact with a subcomplex that contains Sra1 (GEX-2) and Nap1 (GEX-3) [21]. This GEX-2/GEX-3 subcomplex interacts with ABI-1. Thus, ABI-1 could be redundantly bound by both MIG-10 and the GEX-2/GEX-3 subcomplex. This redundant binding could occur within a single complex or could occur within separate complexes (see Figure S4). Discrimination between these two possible configurations will require biochemical and structural studies. We propose that guidance signaling molecules may be organized into networks that include redundant physical interactions. This redundancy could provide a more robust mechanism for the control of the actin polymerization. This model is consistent with the observation that mutations in genes that encode guidance signaling proteins (such as mig-10, age-1, unc-34, ced-10, unc-115 and madd-2), generally lead to only weak or nonexistent guidance defects [16]–[18], [30], [31].

In our study, ABI-1 is shown to act in both the UNC-6 and SLT-1 pathways. Several other intracellular outgrowth-promoting proteins have also been implicated in both attractive and repulsive signaling pathways including MIG-10, Rac, Pak, UNC-34 and Abl [16], [17], [38]–[41]. In addition, overexpression of the repulsive UNC-5 receptor can promote neurite outgrowth in cultured cells [42]. Together, these observations suggest that a common set of outgrowth-promoting proteins are involved in both attractive and repulsive responses. A likely explanation for the dual roles of outgrowth-promoting proteins is that they could be oriented by both attractive and repulsive signals, thereby promoting growth towards or away from the source of guidance cue, respectively. Thus, the difference between attraction and repulsion could be in where and how a common set of outgrowth-promoting proteins are localized.

Finally, ABI-1 may link to multiple upstream signaling modules to mediate distinct aspects of axon growth. For instance, recent work has found that the UNC-53 scaffold protein interacts with ABI-1 to promote longitudinal axon growth in C. elegans [32]. In unc-53 loss of function mutants, longitudinal, but not circumferential axon growth is disrupted. Conversely, MIG-10 is thought to mediate circumferential, but not longitudinal axon growth [16], [17]. These observations suggest that the mechanisms that control actin polymerization to drive longitudinal outgrowth are distinct from those that control actin polymerization to drive circumferential guidance. We propose that for the process of circumferential axon guidance, ABI-1 links to the MIG-10 scaffold. By contrast, for the process of longitudinal axon extension, ABI-1 links to the UNC-53 scaffold. Therefore, each of these distinct upstream regulatory processes can both utilize the same actin regulatory complex.

Materials and Methods

Strains

AGC1: slt-1(eh15); abi-1(tm494); cueEx1, AGC2: slt-1(eh15); abi-1(tm494) cueEx2, AGC3: abi-1(tm494); cueIs3, AGC4: cueIs3, AGC5: cueIs3; wve-1(ok3308)/hT2 [bli4(e937); let-?(q782); qIs48], AGC6: slt-1(eh15); abi-1(tm494) cueEx4, AGC8: wve-1(ok3308)/hT2 [bli4(e937); let-?(q782); qIs48]; kyIs262, AGC9: mig-10(ct41)/hT2 [bli4(e937); let-?(q782); qIs48]; kyIs262, AGC10: mig-10(ct41)/hT2 [bli4(e937); let-?(q782); qIs48]; wve-1(ok3308)/hT2; kyIs262, AGC12: abi-1(tm494); slt-1(eh15); zdIs5, AGC13: abi-1(tm494); unc-6(ev400); zdis5, AGC14: abi-1(tm494); zdIs5, AGC15: cueIs3; max-2(nv162), AGC16: wve-1(ne350)/hT2; mig-10(ct41)/hT2, AGC18: unc-6(ev400); slt-1(eh15); abi-1(tm494); zdIs5, AGC19: unc-6(ev400); slt-1(eh15); abi-1(tm494); urEx305. AGC20: cueIs7; abi-1(tm494); zdIs5, AGC21: cueIs7; zdIs5. The wve-1(ne350) allele was a gift from Martha Soto [23], [43]. The wve-1(ok3308) allele was obtained from the CGC and out-crossed 3 times. We found that the ok3308 mutation behaved as a zygotic sterile. The abi-1(tm494) hypomorphic allele was provided by Shohei Mitani.

Transgenes

cueEx1 and cueEx2 [mec-4::abi-1; odr-1::dsred] were created by injecting pAGC2 at 25 ng/ul and odr-1::dsred at 50 ng/ul. urEx305 [mec-4::mig-10a; flp-20::gfp] was created as described previously [17]. cueIs3 [mec-4::mig-10a; flp-20::gfp] was created by integrating urEx305 with a gamma radiation source. cueEx4 [mec-7::abi-1; odr-1::dsred] was created by injecting pAGC3 at 25 ng/ul and odr-1::dsred at 50 ng/ul. kyIs262 [unc-86::myrgfp] was kindly provided by Cori Bargmann. zdIs5 [mec-4::gfp] was obtained from the CGC. evEx344 [mec-7::unc-40; unc-129::gfp] was a gift from Joseph Culotti. cueIs7 was created by integrating evEx344.

DNA constructs

pAGC2 contains the mec-4::abi-1 and was created by amplifying the abi-1 cDNA using the following primers fwd: gcagcagctagccaccatgagtgttaatgatcttcaag and rev: gcagcaggtacctcatactggaactacgtagtttc. The PCR product was cut with NheI and KpnI and ligated into the Nhe1 and Kpn1 sites of pIM207 [17], [44].

pAGC3 contains mec-7::abi-1 and was created by using Nhe1 and Kpn1 to subclone the abi-1 cDNA from pAGC2 into pIM211 [17].

pAGC4 contains GST::abi-1-SH3 and was created by using the following primers to amplify DNA encoding the SH3 domain of ABI-1: fwd:gccacaagcgatccagtctctttgatacgagtgct and rev: gccacaaggaattctcatactggaactacgtagtt. The PCR product was cut with BamHI and EcoRI and cloned into the same sites of pGEX-2T.

PAV197 contains an shRNA construct for Abi1 and PAV16 contains a scrambled control shRNA. Both of these constructs were kindly provided by Giorgio Scita [21].

GST binding assay

GST binding assays were performed as described previously [45]. Briefly, a GST fusion with the SH3 domain of ABI-1 (GST::ABI-1-SH3) was prepared by transforming BL21(DE3) cells with pAGC4. Cell lysates containing MIG-10::GFP were prepared by transfecting HEK293 cells with a plasmid encoding MIG-10::GFP and lysing cells 24 hours later. The GST::ABI-1-SH3 fusion protein was purified and coupled to glutathione-sepharose. Cell lysates were added to the glutathione-GST::ABI-1-SH3 complex and incubated for 2 hours. The glutathione-sepharose-protein complexes were washed three times with 0.1% Triton X-100, boiled in loading buffer and run on and SDS PAGE gel. Bound proteins were detected with an antibody against GFP.

Cell culture

HEK293 cells were grown in DMEM with 10% FBS. Fugene 6 was used to transfect or co-transfect cells with the appropriate plasmids. For co-transfection experiments 2 µg of DNA encoding the appropriate shRNA was mixed 1 µg of DNA encoding GFP or MIG-10::GFP. Cells were transfected in plastic dishes and allowed to grow for 72 hours after transfection. Next, cells were removed from the plastic dishes and were replated onto glass coverslips coated with polylysine. After 24 hours, the cells were fixed with paraformaldehyde and mounted for observation and analysis.

Analysis of phenotypes

For analysis of axon guidance phenotypes, animals were mounted on a 5% agarose pad and observed with a 40× objective. For AVM and PVM ventral guidance, an axon was scored as defective if it failed to reach the ventral nerve cord. For HSN ventral guidance, an axon was scored as defective if it traveled laterally for a distance equivalent to 2 cell bodies or more prior to migrating ventrally. For analysis of multipolarity in the ALM, AVM and PVM neurons, a cell was scored as defective if it had a posterior axon that was longer than 2 cell bodies.

Supporting Information

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