#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#
proLékárníky.cz / Odborné časopisy / PLOS Genetics / 2020 - 5

Correction: The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants

Authors: Takashi Akagi;  Kenta Shirasawa;  Hideki Nagasaki;  Hideki Hirakawa;  Ryutaro Tao;  Luca Comai;  Isabelle M. Henry
Published in the journal: Correction: The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants. PLoS Genet 16(5): e32767. doi:10.1371/journal.pgen.1008845
Category: Correction
doi: https://doi.org/10.1371/journal.pgen.1008845

The images for Figs 5 and 6 are incorrectly switched. The image that appears as Fig 5 should be Fig 6, and the image that appears as Fig 6 should be Fig 5. The figure captions appear in the correct order. Please see the correct Figs 5 and 6 here.

Fig. 1. Functional differentiation between MeGI and SiMeGI.
Functional differentiation between <i>MeGI</i> and <i>SiMeGI</i>.
a-h, N. tabacum transgenic lines expressing either of MeGI or SiMeGI under the control of the 35S promoter. The lines expressing MeGI (a-c) showed rudimental anthers (a) which did not produce functional pollen grains (b), and severe dwarfism with chlorophyll starvation and narrow leaves (c, see S7 Fig for the detail). The lines expressing SiMeGI (d-f) developed regular anthers (d) which produced fertile pollen (e), and showed moderate dwarfism (f). pis: pistil, ra: rudimental anthers, an: anthers. g-h, Both MeGI- and SiMeGI-overexpressing lines were phenotypically different from the control plants transformed with empty vectors (cont), but the MeGI-expressing lines exhibited more severe departure from the WT controls for specific traits, such as leaves width (see S9 Fig). Bars indicate 5mm for a and d, 50mm for c, f, g, and h. i-j, expression patterns of MeGI, SiMeGI, and PI, with actin as a positive control, in the transgenic lines transformed with CaMV35S-MeGI (i) and CaMV35S-SiMeGI (j). k, DNA motifs identified as preferentially bound to following transcription factors all nested within the MeGI/SiMeGI clade: MeGI [25], SiMeGI (our experiments), and three Arabidopsis HD-ZIP1 genes [29], using DAP-Seq analyses (see Methods). l-n, expression patterns of MeGI and SiMeGI in buds and flower primordia were highly correlated (Pearson’s r > 0.7). Expression levels in female (l) and male (m) are expressed as RPKM values. n, Developmental stages.
Fig. 2. Genomic context of the Y-chromosomal region surrounding OGI.
Genomic context of the Y-chromosomal region surrounding <i>OGI</i>.
a, Read coverage from male (blue) and female (pink) samples and male/female coverage ratio across the scaffolds covering the male-specific region of the Y-chromosome. For both the male and female reads, expected coverage a single-copy sites is approximately 20 (grey lines across). This male-specific region was assembled via anchoring of the scaffolds with BAC sequences. Approximately 1.3Mb region was covered by Y-allelic scaffolds. More than 400kb of long repetitive sequences (dotted lines), flank OGI. Outer regions of these hyper repetitive sequences contain male-specific sequences (blue bands in M/F rate) and pseudo autosomal region (PAR)-like sequences (orange lines), where M/F rate was less than 70%, and the percentage of repetitive sequences was much lower. b, The silent divergence rate (dS) between X and Y alleles of the genes located in the PAR-like sequences (orange circles) decreases with distance to OGI. Stil, for most of these genes, the dS value between the X and Y alleles was larger than the average interspecific dS between the X alleles of D. lotus and D. mespiliformis (green square and dotted line), D. lotus and D. virginiana (blue square and dotted line), and D. lotus and D. kaki (red square dotted line). These results suggest that, in these PAR-like sequences, recombination between the X and Y alleles was suppressed before the divergence of Diospyros species, or at least predates the divergence between D. lotus and D. kaki. dS values for genes located in the regions closest to OGI are comparable to dS values between OGI and MeGI (gray circle, dS = 0.205), which suggest that little or no recombination occurred between these sequences after the establishment of OGI. In comparison, dS values between the X and Y alleles of genes located in the recombining region of chromosomes 15 are much lower (while circles on the right).
Zdroje

1. Akagi T, Shirasawa K, Nagasaki H, Hirakawa H, Tao R, Comai L, et al. (2020) The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants. PLoS Genet 16(2): e1008566. https://doi.org/10.1371/journal.pgen.1008566 32069274

Článek A cross-disorder PRS-pheWAS of 5 major psychiatric disorders in UK Biobank
Článek Depletion of Ric-8B leads to reduced mTORC2 activity
Článek A copy number variant is associated with a spectrum of pigmentation patterns in the rock pigeon (Columba livia)
Článek An osteocalcin-deficient mouse strain without endocrine abnormalities
Článek Osteocalcin is necessary for the alignment of apatite crystallites, but not glucose metabolism, testosterone synthesis, or muscle mass
Článek Beyond SNP heritability: Polygenicity and discoverability of phenotypes estimated with a univariate Gaussian mixture model
Článek Accounting for long-range correlations in genome-wide simulations of large cohorts
Článek Novel frameshift variant in MYL2 reveals molecular differences between dominant and recessive forms of hypertrophic cardiomyopathy
Článek The domesticated transposase ALP2 mediates formation of a novel Polycomb protein complex by direct interaction with MSI1, a core subunit of Polycomb Repressive Complex 2 (PRC2)
Článek Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma
Článek The phosphorelay BarA/SirA activates the non-cognate regulator RcsB in Salmonella enterica
Článek Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta)
Článek The genomic landscape of metastasis in treatment-naïve breast cancer models
Článek Trans-ethnic meta-analysis of genome-wide association studies identifies maternal ITPR1 as a novel locus influencing fetal growth during sensitive periods in pregnancy
Článek Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
Článek Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei
Článek Separable, Ctf4-mediated recruitment of DNA Polymerase α for initiation of DNA synthesis at replication origins and lagging-strand priming during replication elongation
Článek Bidirectional crosstalk between Hypoxia-Inducible Factor and glucocorticoid signalling in zebrafish larvae
Článek An EHBP-1-SID-3-DYN-1 axis promotes membranous tubule fission during endocytic recycling
Článek Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models
Článek Interplay between axonal Wnt5-Vang and dendritic Wnt5-Drl/Ryk signaling controls glomerular patterning in the Drosophila antennal lobe
Článek Additive and mostly adaptive plastic responses of gene expression to multiple stress in Tribolium castaneum
Článek Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus
Článek Multiple mechanisms regulate H3 acetylation of enhancers in response to thyroid hormone
Článek A new neuropeptide insect parathyroid hormone iPTH in the red flour beetle Tribolium castaneum
Článek An Out-of-Patagonia migration explains the worldwide diversity and distribution of Saccharomyces eubayanus lineages
Článek Alternative splicing of jnk1a in zebrafish determines first heart field ventricular cardiomyocyte numbers through modulation of hand2 expression
Článek ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing
Článek ALC1/eIF4A1-mediated regulation of CtIP mRNA stability controls DNA end resection
Článek A high-fat diet induces a microbiota-dependent increase in stem cell activity in the Drosophila intestine
Článek The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication
Článek Exome-wide association study reveals largely distinct gene sets underlying specific resistance to dengue virus types 1 and 3 in Aedes aegypti
Článek Correction: Regulation of ATG4B Stability by RNF5 Limits Basal Levels of Autophagy and Influences Susceptibility to Bacterial Infection
Článek Sex-biased genetic programs in liver metabolism and liver fibrosis are controlled by EZH1 and EZH2
Článek UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis
Článek Dynamic genetic architecture of yeast response to environmental perturbation shed light on origin of cryptic genetic variation
Článek Activation of cryptic splicing in bovine WDR19 is associated with reduced semen quality and male fertility
Článek The temporal regulation of TEK contributes to pollen wall exine patterning
Článek Intimate functional interactions between TGS1 and the Smn complex revealed by an analysis of the Drosophila eye development
Článek Glucose transporter 10 modulates adipogenesis via an ascorbic acid-mediated pathway to protect mice against diet-induced metabolic dysregulation
Článek Congenital hearing impairment associated with peripheral cochlear nerve dysmyelination in glycosylation-deficient muscular dystrophy
Článek The Mediator CDK8-Cyclin C complex modulates Dpp signaling in Drosophila by stimulating Mad-dependent transcription
Článek Correction: Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome
Článek Scalable probabilistic PCA for large-scale genetic variation data
Článek Yeast mismatch repair components are required for stable inheritance of gene silencing
Článek Saccharomyces cerevisiae Mus81-Mms4 prevents accelerated senescence in telomerase-deficient cells
Článek Interaction of YAP with the Myb-MuvB (MMB) complex defines a transcriptional program to promote the proliferation of cardiomyocytes
Článek Population genetic models of GERP scores suggest pervasive turnover of constrained sites across mammalian evolution
Článek vyšel v časopise

PLOS Genetics

2020 Číslo 5
Nejčtenější tento týden
Nejčtenější v tomto čísle
Kurzy

Zvyšte si kvalifikaci online z pohodlí domova

Důležitost adherence při depresivním onemocnění
nový kurz
Autoři: MUDr. Eliška Bartečková, Ph.D.
Koncepce osteologické péče pro gynekology a praktické lékaře
Autoři: MUDr. František Šenk
Sekvenční léčba schizofrenie
Autoři: MUDr. Jana Hořínková, Ph.D.
Hypertenze a hypercholesterolémie – synergický efekt léčby
Autoři: prof. MUDr. Hana Rosolová, DrSc.
Multidisciplinární zkušenosti u pacientů s diabetem
Autoři: Prof. MUDr. Martin Haluzík, DrSc., prof. MUDr. Vojtěch Melenovský, CSc., prof. MUDr. Vladimír Tesař, DrSc.
Všechny kurzy
Přihlášení
Zapomenuté heslo

Zadejte e-mailovou adresu, se kterou jste vytvářel(a) účet, budou Vám na ni zaslány informace k nastavení nového hesla.

Přihlášení

Nemáte účet?  Registrujte se

#ADS_BOTTOM_SCRIPTS#