Regulation of olfactory-based sex behaviors in the silkworm by genes in the sex-determination cascade

Summary

Insect courtship and mating depend on integration of olfactory, visual, and tactile cues. Compared to other insects, Bombyx mori, the domesticated silkworm, has relatively simple sexual behaviors as it cannot fly. Here by using CRISPR/Cas9 and electrophysiological techniques we found that courtship and mating behaviors are regulated in male silk moths by mutating genes in the sex determination cascade belonging to two conserved pathways. Loss of Bmdsx gene expression significantly reduced the peripheral perception of the major pheromone component bombykol by reducing expression of the product of the BmOR1 gene which completely blocked courtship in adult males. Interestingly, we found that mating behavior was regulated independently by another sexual differentiation gene, Bmfru. Loss of Bmfru completely blocked mating, but males displayed normal courtship behavior. Lack of Bmfru expression significantly reduced the perception of the minor pheromone component bombykal due to the down regulation of BmOR3 expression; further, functional analysis revealed that loss of the product of BmOR3 played a key role in terminating male mating behavior. Our results suggest that Bmdsx and Bmfru are at the base of the two primary pathways that regulate olfactory-based sexual behavior.

Keywords:

Gene expression – Gene regulation – Pheromones – Animal antennae – Mating behavior – Sex determination – Moths and butterflies – Silkworms

Introduction

Sex determination pathways control the sexually dimorphic traits of males and females, including sexual differentiation and sexual behavior [1]. The genetic cascades of primary signalling that underlie sex determination in insects have high diversity among species. In the model insect Drosophila melanogaster, sex determination is controlled hierarchically by X:A, Sex-lethal (Sxl), transformer or transformer 2 (tra/tra2), doublesex (dsx), and fruitless (fru) [2, 3]. An X:A ratio of 1 promotes transcription of Sxl and results in feminization, while an X:A ratio of 0.5 results in Sxl suppression and male differentiation [4, 5]. Sxl proteins control the splicing of female tra mRNA which gives rise to functional proteins, while no functional Sxl proteins are produced in the male [6]. Tra and tra2 proteins control the splicing of dsx and fru which are located at the bottom of the sex determination pathway to maintain sexual development and behavior [7–9]. The sex determining genetic cascade based on tra/tra2 control of dsx and fru splicing is widely conserved in many Diptera, Coleoptera and Hymenoptera, while the domesticated Bombyx mori, lack tra/tra2 as regulators of dsx/fru [3]. In the silkworm, the sex determination cascade involves at least 4 distinct components: a female-enriched PIWI-interacting RNA (fem), a responding gene, BmMasc, a P-element somatic inhibitor (BmPSI)/ (BmImp), and Bmdsx [10–12]. The product of the W chromosome derived fem piRNA targets the downstream gene, BmMasc, to control Bmdsx sex-specific splicing; BmPSI and BmImp regulate Bmdsx splicing through binding CE1 sequences of Bmdsx pre-mRNA [10]. Although the upstream signal is not conserved, with X:A and fem as the primary signals in the fruit fly and silkworm, respectively, the role of dsx is conserved.

Insects have sex-specific splicing that generates a male- (dsx^M) and female-specific (dsx^F) dsx isoform. Previous reports have shown that the Bmdsx gene products (Bmdsx^M and Bmdsx^F) control sexually dimorphic traits such as formation of abdominal segments and external and internal genitalia [13–16]. Studies of D. melanogaster have shown that the development of numerous sexually dimorphic traits are controlled by Dmdsx, including Dmdsx^F controlled female-specific yolk gene transcription and female-specific spermathecae, Dmdsx^M controlled male-specific abdominal pigmentation and male-specific sex combs [17–20]. The Dmdsx^M gene products also regulate courtship behaviors, including licking, courtship song and copulatory behaviors [21]. The courtship behavior of D. melanogaster males consists of a series of discrete elements, including orientation toward the female, following the female, extending and vibrating one wing to produce a courtship song, licking the external genitalia, and attempting copulation [22]. Dmdsx^M is expressed in about 900 neurons of the central nervous system, the majority of which also express Dmfru^M [21]. Dmfru^M function is both necessary and sufficient for nearly all aspects of male courtship behavior, and it is expressed in a dispersed subset of approximately 2,000 neurons in the central and peripheral nervous systems [23–25]. Males lacking Dmfru^M appear to be normal externally yet are profoundly defective in most aspects of courtship behavior [22]. Moreover, Dmdsx^M is necessary and sufficient for Dmfru^M-independent courtship [26].

Although in recent years studies of neural and genetic mechanisms of sexual behavior in fruit flies indicate that Dmdsx^M and Dmfru^M are the master regulators of many sexually differentiated processes and behaviors [27, 28], how these master genes act to control neural development to build these complex behaviors by regulating downstream genes is still not fully understood [29]. Many studies have shown the fru gene to be conserved functionally with sex-specific splicing expression patterns among Diptera, including Anopheles gambiae, Ceratitis capitata, Aedes aegypti, Nasonia vitripennis, and Musca domestica, and a Blattodea, Blatella germanica [29–35]. However, the genetic regulatory mechanism of sexual behavior remains unclear in lepidopteran insects. Our previous study showed that loss of the Bmdsx^M blocks male sexual behavior. The defective expression of BmOR1 in male mutants of Bmdsx^M contributes to the failed courtship behavior of orientation and leads to subsequent rejection of males by females [13].

B. mori has a simple sex pheromone system: female silkmoths emit the sex pheromones bombykol [(E,Z)-10,12-hexadecadien-1-ol] and bombykal [(E,Z)-10,12-hexadecadienal] at a typical ratio of 11:1. The major pheromone bombykol triggers the full sexual behavior of the male moth [36, 37]. Two sex pheromone receptors, BmOR1 and BmOR3, have male specific expression and are specific for bombykol and bombykal, respectively [38]. The pheromone binding protein BmPBP1, which has a male-biased expression, is required for the selectivity of BmOR1 for bombykol [39]. Loss of function mutations in BmPBP1 or BmOR1 cause the disappearance of male sexual behavior [40, 41]. Previous studies showed that the sex determination gene Bmdsx controls the expression of BmPBP1 and of BmOR1 [42, 14]. These results suggest that Bmdsx promotes male sex behavior, activating specific receptors of the olfactory system.

In the current study, we used genetic and electrophysiological approaches to investigate the molecular regulatory mechanisms controlling sexual behaviors in the silkworm by analyzing the mating behaviors of silk moths with mutations in known sex determination factors. Using our previously reported non sex-specific mutants BmMasc, BmPSI, and Bmdsx [12, 13], and the Bmfru mutant described here, we found that the sex determination pathway influences the development of the olfactory system to regulate courtship and mating behaviors. The sex determination pathway regulates morphological development and also the response to bombykol. The sexually dimorphic antennal morphologies of the male mutants of BmMasc, BmPSI, and Bmdsx are affected, which result in abnormal responses to bombykol and loss of courtship behavior. In contrast, male mutants of Bmfru show normal courtship but defective mating behavior. Knockout of the Bmfru downstream gene, BmOR3, impairs the response to bombykal but not bombykol, with normal courtship but extended mating behavior. Our data provide in vivo evidence of the function of the sexual differentiation pathway in the regulation of olfactory-based sexual behavior of B. mori.

Results

Sex determination pathway mutants have altered courtship and mating behaviors

We used a binary transgenic CRISPR/Cas9 system to obtain a Bmfru mutant. The Bmfru gene had not been reported in the silkworm, so we searched the silkworm genome database and identified a locus that encodes a protein (NCBI Accession number: EU649701.1) with a conserved BTB domain found in the FRU proteins of D. melanogaster and M. domestica (S1A Fig). We designed a small guide RNA (sgRNA) to target exon 3 of the putative Bmfru gene (S1B Fig). Through germline transformation, we obtained a single U6-sgRNA transgenic line. To obtain heritable and homozygous mutants to assess preference behaviors, we performed a series of crossing strategies and PCR-based screening experiments (S1C Fig) as described previously [43]. The U6-sgRNA and nos-Cas9 parental transgenic lines were crossed with each other to obtain F₁ founder moths, then ten random F₁ female moths were crossed with wild-type males to obtain heterozygous mutants. F₂ heterozygous mutant females were individually crossed with wild-type males to obtain independent lines of F₃ heterozygous progeny, each potentially carrying a unique mutant allele. Individuals within F₃ heterozygous lines were crossed with each other to obtain F₄ homozygous mutants (S1C Fig) resulting in approximately 25% homozygous mutants in the F₄ progeny. We characterized the mutations by PCR using gene-specific primer pairs. All of the homozygous mutants had four deleted base pairs that resulted in a premature termination codon (S1D Fig), confirming that the original CRISPR/Cas9-induced mutation had occurred.

Next, we analyzed courtship behavior of male mutants with a wild-type virgin female as the target and a mutant male (M-M) as the test at distances of 10 and 20 centimeters. The male sexual behavior of silk moth consists of the following steps: the male silk moth first recognizes the female by responding to a sex pheromone released by the female, the male moth then exhibits a programmed sequence of walking consisting of transitory bouts of straight-line walking, zig-zag turns and looping to climb toward the female. Then the male displays orientation, wing flapping (wing song), or turns around, and uses its forelegs to touch the female’s abdomen. After confirming the position of the female’s external gentitalia the male attempts to mate with the female using its claspers. Once the male mates with female, the male continues to flap its wings intermittently and copulates for several hours. The Bmfru mutant males did recognize wild-type females and displayed normal courtship behavior (10 cm: 91%, p = 0.034; 20 cm: 93%, p = 0.118). Nevertheless, despite many attempts at copulating, the Bmfru mutant males could not mate with the wild-type female (S1–S3 Movies). Thus, the courtship index of Bmfru mutant males was normal, whereas the mating index was zero (Fig 1). In contrast, BmMasc, BmPSI, and Bmdsx mutant males did not display any courtship behavior (i.e., no orientation, wing song, or turning around; Bmdsx behavior is illustrated in S4 and S5 Movies), so the courtship and mating indexes of these three mutants were zero (Fig 1).

Antennal structures are abnormal in BmMasc, BmPSI, and Bmdsx mutants

Since insect antennae play a key role in the olfactory-based chemical communication necessary for courtship behavior, we evaluated the morphology of antennal structures in the mutants. In wild-type B. mori, the length of male antenna (5.40±0.15) is longer than the female antenna (4.75±0.19), and the number of sensilla trichodiea in one SEM scan field on antennae of male (83.60±7.28) is much more than female (59.60±3.44) (Fig 2). The antennae were significantly shorter in males with mutations in BmMasc (18%, 4.45±0.09, p = 0.0001), and BmPSI (17%, 4.50±0.13, p = 0.0003), whereas antenna lengths were normal in Bmdsx (4.90±0.16, p = 0.065) and Bmfru mutant males (5.20±0.19, p = 0.7349) (Fig 2A and 2C). Using scanning electron microscopy (SEM), we observed that the numbers of sensilla trichoidea were significantly decreased in males with mutations in BmMasc (38%, 52.00±3.18, p = 0.0003), BmPSI (40%, 50.20±3.51, p = 0.0001), and Bmdsx (26%, 62.00±2.80, p = 0.0097) compared to wild-type males (83.60±7.28), whereas the Bmfru male mutants (96.00±4.14, p = 0.1894) had similar numbers of sensilla trichoidea to wild-type males (Fig 2B and 2D). The female mutant antennae had no significant change compared with wild-type females (Fig 2C and 2D). These results suggest that loss of BmMasc, BmPSI, or Bmdsx affects the development of antennal structures, which might underlie the observed dysfunctions in courtship and mating.

Electrophysiological analyses reveal abnormal responses to sex pheromone components upon loss of sex determination genes

The female silkmoth attracts males by emitting sex pheromones. The pheromone bombykol is critical to attracting the male moths, whereas the minor pheromone bombykal plays an antagonistic role in mating behavior [36, 44]. We tested the responsiveness of mutant males to bombykol and bombykal using two methods: Electroantennogram (EAG) and single sensillum recording (SSR). We used EAG to detect the responsiveness to bombykol or bombykal at the level of whole antennae and SSR to evaluate responses of individual long sensilla trichoidea as described previously [40]. Compared to wild-type males (0.71 ± 0.12), Bmdsx (0.32 ± 0.05, p = 0.0183) and Bmfru (0.31 ± 0.08, p = 0.0067) mutants, the BmMasc (0.12 ± 0.07, p = 0.0004) and BmPSI (0.18 ± 0.12, p = 0.0044) mutants showed significantly lower EAG responses to bombykol (Fig 3A and 3C). BmMasc (0.07 ± 0.03, p < 0.0001), BmPSI (0.05 ± 0.03, p < 0.0001), and Bmfru (0.09 ± 0.04, p < 0.0001) mutant males displayed significantly lower EAG responses to the minor pheromone bombykal than Bmdsx (0.33 ± 0.03, p = 0.0003) mutants; nevertheless, the response of the Bmdsx mutants was also significantly lower than that of the wild-type (0.72 ± 0.10) moths (Fig 3A and 3D). These findings suggested that loss of any of the functions exerted by these sex determination and sexual differentiation genes interrupts the neuronal response to pheromones at the level of the antennae.

Next, we examined the responses of neurons within the long sensillum trichodea of the four mutants and wild-type males using SSR. From the spike traces of wild-type silkworms, two neurons (expressing BmOR1 or BmOR3) were distinguished in the long sensillum trichodea. A larger amplitude was induced by the BmOR1 neuron responding to bombykol, and a smaller one was evoked by the BmOR3 neuron responding to bombykal (Fig 3B). The neuronal responses of the BmPSI (bombykol: 1.64 ± 0.53, p < 0.0001 and bombykal: 0.30 ± 0.11, p < 0.0001) and Bmdsx (bombykol: 3.20 ± 1.35, p value = 0.0014 and bombykal: 1.47 ± 1.03, p < 0.0001) mutants to both bombykol and bombykal were significantly lower than wild-type (bombykol: 10.83 ± 1.43 and bombykal: 11.63 ± 1.54) whereas the neuronal responses of the BmMasc mutants to bombykol (14.90 ± 1.60, p = 0.1037) and bombykal (8.86 ± 1.33, p = 0.1374) were similar to wild-type males (Fig 3B, 3E and 3F). Although the single sensillum trichodea in the BmMasc mutants responded normally to bombykol and bombykal, it is possible that a decrease in the number of sensillum trichodea may contribute to the failure of courtship behavior of these mutants. The Bmfru mutants responded normally to bombykol (9.13 ± 0.92, p = 0.7342) but did not respond to bombykal (0.61 ± 0.31, p < 0.0001) (Fig 3B, 3E and 3F). This suggested that Bmfru mutants display normal courtship behavior because they have a normal response to bombykol.

Expression of male-biased olfactory system genes is altered in mutants

Olfaction plays an important role in insect behaviors such as mate recognition. To test whether expression of olfactory system genes in the antennae were affected by loss of sex determination pathway genes, we quantified expression of genes that encode factors necessary for mate recognition by males, notably, pheromone binding proteins BmPBP1, BmPBP2, and BmPBP3 and odorant receptors BmOR1, BmOR2, and BmOR3 [45]. BmPBP1 binds to bombykol, and its dysfunction causes the failure of male courtship behavior [41]. Although BmPBP1 was expressed at wild-type levels in male mutants in Bmfru, it was significantly decreased in the males mutant in BmMasc, BmPSI, and Bmdsx. Compared to wild-type males, BmPBP2 and BmPBP3 RNA expression levels were significantly higher in male mutants in BmMasc, Bmdsx, and Bmfru but lower in BmPSI mutants (Fig 4). Levels of OR1 and OR3 were significantly lower in all mutants (Fig 4). Mutations in Bmdsx reduce significantly the expression not only of PBP1 and BmOR1, but also BmOR3, and increase the expression of BmPBP3. No significant data are available for BmOR2 in Bmdsx mutant. Furthermore, mutations in Bmfru reduce significantly the expression of BmOR1 and much more of BmOR3, and increase the expression of BmPBP2, and possibly also of BmPBP3. No significant data are available for BmOR2. So the expression of BmOR3 is decreased in males by both Bmdsx and Bmfru, with Bmfru having an higher effect. BmOR1 higher expression in males is promoted mainly by Bmdsx but also by Bmfru (Fig 4). BmOR2 expression was normal except in the BmMasc and BmPSI mutant where it was expressed at levels lower than those observed in wild-type males (Fig 4). These expression patterns suggested that BmPSI is required in males for normal expression of 5 out of the 6 olfactory genes tested.

The normal response to sex pheromones by a single sensillum of the BmMasc mutant as shown by SSR may be due to the expression of BmOR1 and BmOR3 at about 60% of wild-type levels. Interestingly, expression of BmOR3 was only 2% of wild-type levels in the Bmfru mutant, whereas the BmOR1 gene was expressed at about 70% of levels in the wild-type males and BmPBP1 expression was normal. Such relatively low expression of BmOR1 and BmPBP1 likely allowed the normal response to bombykol resulting in the normal courtship behavior of these mutant males. Altogether, these results suggest that sex determination pathway genes have an important role in establishing the sexually dimorphic expression of olfactory system genes, whereby Bmdsx primarily contributes to the expression of BmPBP1 and BmOR1 while Bmfru primarily contributes to the expression of BmOR3.

Loss of BmOR3 does not alter courtship behavior but does extend mating time

To further analyze the olfactory system-related genes in the antennae of Bmfru mutant males, we compared antennal transcriptomes of the adult Bmfru mutant male silk moths to those of wild-type males using RNA-seq. We identified 273 differentially expressed genes, 176 of which were down-regulated and 97 of which were up-regulated (S2A Fig). We found that olfactory system-related genes including BmPBP1, BmPBP2, BmPBP3, BmOR1, and BmOR3 were differentially expressed (S2B Fig) as shown by RT-qPCR. In the Bmfru mutant antennae, BmOR1 expression was 0.99-fold lower and BmOR3 was 5.32-fold lower than in the wild-type antennae.

To further investigate the function of BmOR3, we used a binary transgenic CRISPR/Cas9 system to target exon 2 of BmOR3 (Fig 5A). We established three independent U6-sgRNA parental transgenic lines and then made crosses within each line to obtain F₁ founder moths. Quantitative real-time RT-PCR showed a decreased in BmOR3 mRNA levels of F₁ founder individuals by over 99% in each of the three mutant lines compared with wild type moths (Fig 5A and 5B). Characterization of the somatic mutations by PCR using gene-specific primer pairs indicated that mutants had deletions at the target site caused by non-homologous end joining-induced indels (Fig 5C and 5D). These results suggested that F₁ individuals carried truncated proteins of BmOR3, so we used the F₁ founder moths to analyze adult behavior.

The BmOR3 mutant males displayed normal courtship behavior, including orientation, wing song, and turning, and the courtship and mating indexes were only slightly below normal (Fig 5E and 5F). As noted previously, the normal duration of copulation is several hours. Although almost all wild-type males had autosegregated after 12 hours of mating, most of the BmOR3 mutant males had not (Fig 5G). Electrophysiological analyses revealed that the BmOR3 mutants responded normally to bombykol but had lost responsiveness to bombykal (Fig 6); this was also the case for the Bmfru mutants. These findings indicated that BmOR3 is not necessary for courtship.

Discussion

Previous studies have shown that BmOR1 and BmOR3 encode sex pheromone receptors in the silkworm [37, 39, 40]. Although the mechanism of sex determination in the silkworm has also been studied in recent years [13, 46, 47], it has not revealed a connection between these two major pathways which control the sexual behavior and morphology of the insect. Here, we provide genetic evidence for a functional interplay between these sex pheromone receptors and genes in the sex determination pathway. Our results support the notion that the Bmdsx-BmOR1-bombykol pathway regulates courtship behavior and that Bmfru-BmOR3-bombykal regulates mating (Fig 7).

Exposure to bombykol, the major female pheromone, was sufficient to induce pheromone source orientation behavior in male moths, as was the artificial activation of BmOR1 expressing olfactory receptor neurons [48, 49]. Previous studies have shown that BmOR1 and BmOR3 are specifically expressed in adult males [50]. This sexually dimorphic pattern of gene expression suggested that BmOR1 and BmOR3 are regulated by Bmdsx and Bmfru. TALEN-mediated knock out of BmOR1 indicated that BmOR1 is the sex pheromone receptor that mediates the pheromone response in male silkmoths [40]. The minor component, bombykal, was thought to negatively modulate the initiation of orientation behavior [44]. However, our results support a conclusion that BmOR3 has little effect on the initiation of orientation behavior. In our study, BmOR3 mutants which did not respond to bombykal had normal courtship but had extended mating behavior. Additionally, Bmfru mutants, which expressed almost no BmOR3, had normal courtship behavior but did not mate. This suggests that the BmOR3-bombykal interaction does not play a key role in the recognition of females by male moths and that Bmfru might act through other pathways to control mating behavior. Daimon et al. showed that the wing fluttering response of B. mori males to bombykol is strongly inhibited by bombykal, thereby indicating that bombykal acts as a behavioral antagonist [44]. All of these observations suggest that bombykal may play role in terminating copulation behavior.

In dipteran insects, fru is located downstream of tra in the sex determination pathway, and dsx is involved in the regulation of sexual behavior [34, 51]. No gene homologous to tra has been found in the silkworm genome, indicating that the sex determination pathway in B. mori is different from dipterans. Additionally, Bmfru is not like Dmfru, which has sex-specific splicing. Bmfru was found to have male-baised expression in the brain and testis [52]. This suggests that the regulatory mechanisms involving fru gene expression are different between fruitfly and silkworm. In Drosophila, a PSI–U1 snRNP interaction regulates male mating behavior, and one of its direct targets is Dmfru [53]. This suggests that DmPSI regulates mating behavior through Dmfru and other genes. By contrast, in the silkworm, BmPSI and BmMasc are upstream of the sex determination factor Bmdsx [11, 13]. Knockout of BmPSI caused the failure of courtship. In addition to BmOR2, the genes encoding BmOR1, BmOR3, BmPBP1 and BmPBP, were downregulated in the BmPSI mutant males produced in our study. This suggested that BmPSI might exert pleiotropic effects on olfactory development. On the other hand, BmOR2 was expressed normally in BmMasc mutant males, and changes in expression of other olfactory system genes were more moderate in BmMasc mutant males than in BmPSI mutant males. Moreover, the BmMasc mutant responded to pheromones normally as shown by SSR, even though the signal from whole antennae was decreased as shown using EAG. These results suggest that olfactory neurons are functionally normal but may be decreased in number in the BmMasc mutant.

In conclusion, by using a comprehensive set of knockout mutations in genes Bmdsx, BmPSI, BmMasc, Bmfru, and BmOR3, we showed that the sex determination cascade in B. mori contributes to the establishment of olfactory system-based sexual behaviors. We found that the sex determination genes control behavior by regulating expression of genes encoding olfactory receptors. BmMasc and BmPSI act as upstream signals and Bmdsx acts as the performer located at the bottom of the cascade to control courtship behaviors by regulating BmOR1, as well as BmOR2 (BmPSI) and both copies of BmOR3. The Bmfru gene product contributes to courtship behavior by regulating BmOR3, BmOR1 (slight effect) and other unknown pathways. Future work should focus on how these sex determination genes affect neuronal modulations that influence sexual behaviors.

Materials and methods

Silkworm strain

Silkworms of the Nistari genetic background (a multivoltine, non-diapausing strain) were used in all experiments. Larvae were reared on fresh mulberry leaves under standard conditions. BmMasc, BmPSI and Bmdsx mutants are described in our previous reports. The parental transgenic U6-sgRNA and nos-Cas9 lines were reared separately. Crossing these two lines produce heteroallelic mutations in somatic or germ cells of F₁ individuals. F₁ individuals carrying heteroallelic mutations were used in this study. The detection of genomic mutations and measurement of mRNA levels among these three F₁ lines were reported previously [12, 13].

Plasmid construction and germline transformation

To target the Bmfru and BmOR3 genes, plasmids pBac[IE1-DsRed2-U6-sgRNAs] (U6-sgRNA) were constructed to express sgRNA under the control of the silkworm U6 promoter and the DsRed fluorescence marker gene, under control of an IE1 promoter. The sgRNA targeting sequences were selected by manually searching genomic regions for sequences that matched the 5′-GG-N₁₈-NGG-3′ rule [54]. sgRNA sequences were checked bioinformatically for potential off-target binding to the relevant silkworm genomic sequence using CRISPRdirect (http://crispr.dbcls.jp/) [55]. All sgRNA and oligonucleotide primer sequences for plasmid construction are listed in S1 Table. Plasmid construction was performed as described previously [13]. Each U6-sgRNA plasmid was mixed with a piggyBac helper plasmid and microinjected separately into fertilized eggs at the pre-blastoderm stage. G₀ adults were mated to WT moths, and the resulting G₁ progeny were scored for the presence of the DsRed marker gene product using fluorescence microscopy (Nikon AZ100).

Genotyping analysis

For BmOR3 mutant, animal from U6-sgRNA transgenic line was mated with the nos-Cas9 line to obtain mutated F₁ animals. For Bmfru mutant, animal from female founder animal was mated with male WT to obtain mutated F₂ animals. Genomic DNA of mutated animals was extracted at the larval stage using standard SDS lysis-phenol treatment after incubation with proteinase K, followed by RNase treatment and ethanol precipitation. The resulting individual DNA samples from mutant animals were separated by sex using PCR amplification with primers specific to the W chromosome (S1 Table). Mutation events were detected by PCR amplification using gene-specific primers that bound upstream or downstream from each target (S1 Table). Amplified products were visualized by agarose gel electrophoresis. Amplicons were sub-cloned into the pJET-1.2 vector (Fermentas), and six positive clones of each line (one Bmfru and three BmOR3 lines) were selected and sequenced using Illumina NextSeq 500 platform (Sunnybio, Shanghai).

Photography and scanning electron microscopy (SEM)

Antennae of mutant and wild-type animals were dissected, photographed under a light microscope (Nikon, Tokyo, Japan) using a digital camera (Nikon DS-Ri1, Japan), and lengths measured on the images.

The dissected antennae were fixed overnight in a solution of 90 ml 70% ethanol, 5 ml acetic acid, and 5 ml 37% methyl aldehyde, dehydrated in a series of 70%, 80%, 90%, and 100% ethanol baths for 5 min each, and dried (CO₂ for 6 h in a Critical Point Dryer). The dissected materials were coated with gold by JFC-1600 sputter (JEOL, Rigaku, Japan), and the middle parts of the antennae were observed by SEM using a JSM-6360LV microscope (JEOL, Rigaku, Japan).

Analysis of courtship and mating behavior

BmMasc, BmPSI, Bmdsx, and BmOR3 mutant males were from heterozygous F₁ individuals. Bmfru mutant males could be distinguished by a behavior test monitoring in the presence of WT virgin females. In the absence of being able to fly, silkworm sexual behavior is dependent on walking distance. Therefore, we set a test field to measure movement within a radius of 10 cm or 20 cm as reported in a previous study [43] which was sufficient for male silk moths to recognize females. Once the male mates with the female, it continues to flap its wings and can remain copulated for several hours. Experientially, continuous mating for 30 minutes ensures normal sperm transfer and reproduction. So we defined and evaluated a courtship index by the following steps: (1) male moves toward the female and successfully displays orientation behaviors; (2) wing song; and (3) reorientation and tipping the abdomen. Courtship index was recorded as 1 when male moth displayed these three steps. The mating index was evaluated by measuring whether the male copulated with the female continuously for 30 minutes. Here, we set up 30 or 50 pairs as a group to measure the courtship or mating index, 3 independent biological replicates for each mutants or WT. The behavioral assays were performed at 25 °C and 60% relative humidity under normal ambient light.

Electroantennogram (EAG) recordings

Five to eleven antennas each taken from more than five virgin male moths 1–2 days after eclosion were used for EAG recordings. EAG values were recorded by using a method similar to one previously reported [56]. The antenna was cut off at the base from the head, and a few terminal segments of the antenna were excised to achieve better contact. The cut ends of the antenna were connected with two recording glass electrodes filled with 0.1 M KCl. Five to eleven individuals of each genotype were evaluated. The recordings were performed under an Olympus SZ61 microscope.

Pheromone components (bombykol and bombykal, 96% purity, purchased from Nimrod Inc., Changzhou, China) were diluted in hexane (98% purity, Sigma-Aldrich Co., St. Louis, MO, USA) and a dose of 10 μg was used for each trial as previously described [43]. Hexane was used as the control. Briefly, a filter paper strip (2.5 × 0.9 cm) was wet with 10 μl test solution and allowed to dry for 3 min, then the paper strip was inserted into a Pasteur pipette placed perpendicularly through a hole in a metal-lined tube with a humid airflow of 0.5 L/min.

Signals were amplified 10-fold (10 s, starting 1s before stimulation) by a high impedance pre-amplifier (IDAC-2 USB System, Syntech, Kirchzarten, Germany) then sent to a computer via an analog-digital converter. Off-line analysis was carried out by EAGpro 2.0 software (Syntech, The Netherlands). Relative EAG responses for each compound were calculated by subtracting EAG response for the blank from the EAG response to the test compound.

Single sensillum recordings (SSR)

To perform single sensillum recordings, a 1–2 day-old virgin male silk moth was placed in a remodeled 1-ml plastic pipette with the protruding head fixed by dental wax. The exposed antenna was attached to a cover-slip with double-faced adhesive tape. A recording tungsten wire electrode was inserted into the sensilla and reference tungsten wire electrodes were inserted into the compound eyes. Data were obtained for 3–6 individuals for each genotype and 10–20 sensilla for each individual were examined. The recordings were performed under a LEICA Z16 APO microscope at 920 × magnification.

Pheromone components were prepared as described in the “Electroantennogram (EAG) recordings” section. Humid air flow was set at 1.4 L/min, and a stimulus air pulse for 300 ms was controlled by a Syntech Stimulus controller (CS-55, Syntech, Kirchzarten, Germany). Signals were amplified 10-fold (10 s, starting 1 s before stimulation) by a high impedance pre-amplifier (IDAC-4 USB System, Syntech, Kirchzarten, Germany) then output to a computer via an analog-digital converter. Off-line analysis was carried out using AUTOSPIKE, v. 3.9, software (Syntech, Kirchzarten, Germany). The filter setting was 300 Hz at low cutoff and 2 kHz at high cutoff. The responses were measured by counting the number of action potentials within 1 s after stimulation. The number of olfactory sensory neurons housed in a single sensillum was determined based on the differences in spike amplitudes.

Quantitative RT-PCR

Total RNA was extracted from 10 silkworm antennae from 5 males per genotype using Trizol reagent (Invitrogen) and treated with RNase-free DNAse I (Ambion). cDNAs were synthesized using the Omniscript Reverse transcriptase kit (Qiagen) in a 20 μl reaction mixture containing 1 μg total RNA. Quantitative real-time RT-PCR (RT-qPCR) assays were performed using SYBR Green Realtime PCR Master Mix (Thermo Fisher Scientific) on an Eppendorf Real-time PCR System MasterCycler RealPlex instrument. RT-qPCR reactions were carried out with gene-specific primers (S1 Table). A 10-fold serial dilution of pooled cDNA was used as the template for standard curves. Quantitative mRNA measurements were performed in three independent biological replicates, and data were normalized to the amount of Bmrp49 mRNA [12].

RNA-seq protocol and data analysis

Illumina sequencing as perfomered as our previous study [57], total RNA was isolated from 10 Bmfru mutant and WT antennas using TRIzol (Invitrogen, Carlsbad, CA, USA), and the residual DNA was removed with RNase-free DNase I (New England BioLabs, Ipswich, MA, USA) for 30 min at 37 °C. For RNA-seq, library construction and sequencing using an Illumina HiSeq 2000 were conducted by BGI Genomic Services (Shenzhen, China), briefly described as follows. The mRNA was enriched using oligo (dT) magnetic beads samples were mixed with a fragmentation buffer, and the mRNA reduced to short fragments (~200 bp). The first strand of the cDNA was synthesized using random hexamer primers,buffer, dNTPs, RNase H, and DNA polymerase I were added to synthesize the second strand, and the double-stranded cDNA was purified with magnetic beads followed by performing end repair and 3’-end single nucleotide adenine addition. Finally, sequencing adaptors were ligated to the fragments which were enriched by PCR amplification, and an Agilent 2100 Bioanaylzer and an ABI Step One Plus Real-Time PCR System were used to quantify libraries. The library products were sequenced using an Illumina HiSeq 2000 (BGI Biotech Co. Ltd.). The raw sequencing data were qualified, filtered, and mapped to the reference silkworm genome database (http://silkworm.genomics.org.cn/) using tophat/bowtie2. The UniGene abundances were measured in fragments per kb of exon per million fragments mapped (FPKM). The differentially expressed genes were annotated functionally using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes annotations.

Statistical analysis

Behavioral and RT-qPCR data were analyzed in GraphPad Prism 6, and electrophysiological data were analyzed in Spike 3.9 and EAGpro 2.0. Experimental data were analyzed with the Fisher exact test, chi-squared test (SPSS 20.0), ANOVA (one-way ANOVA, Dunnett’s multiple comparisons test) or Student’s t-test (Graphpad 6.0). At least three independent replicates were used for each treatment and means ± SEM were plotted. Detailed statistical information relating to each experiment is provided in the relevant Method Details or figure legends.

Supporting information

S1 Fig [a]
A binary transgenic CRISPR/Cas9 system induces homozygous mutations at the locus in . .

S2 Fig [a]
Comparison of mutant and wild-type male moth antennae transcriptomes.

S1 Movie [mp4]
A wild-type male successfully copulating with a wild-type female.

S2 Movie [mp4]
A mutant male failing to copulate with a wild-type female.

S3 Movie [mp4]
A mutant male failing to copulate with a mutant female.

S4 Movie [mp4]
A mutant male failing to copulate with a wild-type female.

S5 Movie [mp4]
A mutant male failing to copulate with a mutant female.

S1 Text [docx]
Protein sequences used in .

S1 Table [xlsx]
Oligonucleotide primers used in this study.

S2 Table [xlsx]
Raw data for plots in Figs and .

S3 Table [xlsx]
Raw data for plots in .

S4 Table [xlsx]
Raw data for plots in Figs and .

S5 Table [xlsx]
Raw data for plots in Figs and .

S6 Table [xlsx]
Raw data for plots in .

S7 Table [xlsx]
Raw data for plots in .