What is ancestry?

English version

Autoři: Iain Mathieson ^aff001; Aylwyn Scally ^aff002
Působiště autorů: Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America ^aff001; Department of Genetics, University of Cambridge, Cambridge, United Kingdom ^aff002
Vyšlo v časopise: What is ancestry?. PLoS Genet 16(3): e32767. doi:10.1371/journal.pgen.1008624
Kategorie: Opinion Piece
doi: https://doi.org/10.1371/journal.pgen.1008624

Zdroje

1. Donnelly KP. The probability that related individuals share some section of genome identical by descent. Theoretical Population Biology. 1983;23(1):34–63. doi: 10.1016/0040-5809(83)90004-7 6857549

2. Coop G. How many genetic ancestors do I have? https://gcbias.org/2013/11/11/how-does-your-number-of-genetic-ancestors-grow-back-over-time/ Accessed 11/4/19 2013.

3. Griffiths RC, Marjoram P. An ancestral recombination graph. In: Donnelly P, Tavaré S, editors. Progress in Population Genetics and Human Evolution. Berlin: Springer-Verlag; 1997. p. 257–70.

4. Li H, Durbin R. Inference of human population history from individual whole-genome sequences. Nature. 2011;475(7357):493–6. doi: 10.1038/nature10231 21753753

5. Schiffels S, Durbin R. Inferring human population size and separation history from multiple genome sequences. Nat Genet. 2014;46(8):919–25. doi: 10.1038/ng.3015 24952747

6. Rasmussen MD, Hubisz MJ, Gronau I, Siepel A. Genome-wide inference of ancestral recombination graphs. PLoS Genet. 2014;10(5):e1004342. doi: 10.1371/journal.pgen.1004342 24831947

7. Speidel L, Forest M, Shi S, Myers SR. A method for genome-wide genealogy estimation for thousands of samples. Nat Genet. 2019;51(9):1321–9. doi: 10.1038/s41588-019-0484-x 31477933

8. Kelleher J, Wong Y, Wohns AW, Fadil C, Albers PK, McVean G. Inferring whole-genome histories in large population datasets. Nat Genet. 2019;51(9):1330–8. doi: 10.1038/s41588-019-0483-y 31477934

9. Pickrell JK, Pritchard JK. Inference of population splits and mixtures from genome-wide allele frequency data. PLoS genetics. 2012;8(11):e1002967. doi: 10.1371/journal.pgen.1002967 23166502

10. Patterson N, Moorjani P, Luo Y, Mallick S, Rohland N, Zhan Y, et al. Ancient admixture in human history. Genetics. 2012;192(3):1065–93. doi: 10.1534/genetics.112.145037 22960212

11. Alexander DH, Novembre J, Lange K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 2009;19(9):1655–64. doi: 10.1101/gr.094052.109 19648217

12. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945–59. 10835412

13. Lawson DJ, Hellenthal G, Myers S, Falush D. Inference of population structure using dense haplotype data. PLoS Genet. 2012;8(1):e1002453. doi: 10.1371/journal.pgen.1002453 22291602

14. Li N, Stephens M. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics. 2003;165(4):2213–33. 14704198

15. Skoglund P, Mathieson I. Ancient genomics of modern humans: The first decade. Annu Rev Genomics Hum Genet. 2018;19:381–404. doi: 10.1146/annurev-genom-083117-021749 29709204

Článek Bayesian network analysis incorporating genetic anchors complements conventional Mendelian randomization approaches for exploratory analysis of causal relationships in complex data

Článek Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering

Článek Transcription-replication conflicts as a source of common fragile site instability caused by BMI1-RNF2 deficiency

Článek The Lid/KDM5 histone demethylase complex activates a critical effector of the oocyte-to-zygote transition

Článek FLS2 is a CDK-like kinase that directly binds IFT70 and is required for proper ciliary disassembly in Chlamydomonas

Článek The emerging role of transcriptional regulation in the oocyte-to-zygote transition

Článek Murine cytomegalovirus infection exacerbates complex IV deficiency in a model of mitochondrial disease

Článek The SNAP hypothesis: Chromosomal rearrangements could emerge from positive Selection during Niche Adaptation

Článek Inhibition of the oligosaccharyl transferase in Caenorhabditis elegans that compromises ER proteostasis suppresses p38-dependent protection against pathogenic bacteria

Článek Histone H4 dosage modulates DNA damage response in the pathogenic yeast Candida glabrata via homologous recombination pathway

Článek Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages

Článek Global mistranslation increases cell survival under stress in Escherichia coli